Dehof, AK, Loew, S, Lenhof, H, and Hildebrandt, A (2013).
NightShift: NMR Shift Inference by General Hybrid Model Training - a Framework for NMR Chemical Shift Prediction.
BMC Bioinformatics, 14(1):98.

Benz, F, Hildebrandt, A, and Hack, S (2012).
A Dynamic Program Analysis to find Floating-Point Accuracy Problems
In: PLDI '12: Proceedings of the 2012 ACM SIGPLAN Conference on Programming Language Design and Implementation.

Dietzen, M, Zotenko, E, Hildebrandt, A, and Lengauer, T (2012).
On the applicability of elastic network normal modes in small-molecule docking.
J Chem Inf Model, 52(3):844-56.

Krupp, M, Itzel, T, Maass, T, Hildebrandt, A, Galle, PR, and Teufel, A (2012).
CellLineNavigator: a workbench for cancer cell line analysis
Nucleic acids research.

Nickels, S, Sminia, H, Mueller, S, Kools, B, Dehof, AK, Lenhof, H, and Hildebrandt, A (2012).
ProteinScanAR - An augmented reality web application for high school education in biomolecular life sciences
In: Proceedings of the 6th International Symposium on Information Visualization in Biomedical Informatics (IVBI) 2012.

Slawski, M, Hussong, R, Tholey, A, Jakoby, T, Gregorius, B, Hildebrandt, A, and Hein, M (2012).
Isotope pattern deconvolution for peptide mass spectrometry by non-negative least squares/least absolute deviation template matching.
BMC Bioinformatics, 13:291.

Bardhan, JP and Hildebrandt, A (2011).
A Fast Solver for Nonlocal Electrostatic Theory in Biomolecular Science and Engineering
In: Design Automation Conference (DAC), 2011 48th ACM/EDAC/IEEE.

Dehof, AK, Rurainski, A, Bui, QB, Böcker, S, Lenhof, H, and Hildebrandt, A (2011).
Automated bond order assignment as an optimization problem
Bioinformatics, 27(5):619-625.

Kneissl, B, Müller, SC, Tautermann, CS, and Hildebrandt, A (2011).
String Kernels and High-Quality Data Set for Improved Prediction of Kinked Helices in α-Helical Membrane Proteins
Journal of Chemical Information and Modeling, 51(11):3017-3025.

Gregorius, B, Schaumloffel, D, Hildebrandt, A, and Tholey, A (2010).
Characterization of metal-labelled peptides by matrix-assisted laser desorption/ionization mass spectrometry and tandem mass spectrometry.
Rapid Commun Mass Spectrom, 24(22):3279-89.