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Markus Krupp, M.Sc., Dipl.-Bioinf.

Markus Krupp, M.Sc., Dipl.-Bioinf.

Research Associate

Room: 03-133
Johannes Gutenberg - Universität Mainz
Institut für Informatik
Staudingerweg 9

55128 Mainz, Germany

Office Phone: +49-6131-39-23704
Fax number: +49-6131-39-23534


Research Interests:

Microarray Analysis, Next Generation Sequencing, Functional Analysis (signaling, metabolic and transcriptional networks), biological databases, tumor genetics, personalized medicine ...


Publications:

Becker, D, Sfakianakis, I, Krupp, M, Staib, F, Gerhold-Ay, A, Victor, A, Binder, H, Blettner, M, Maass, T, Thorgeirsson, S, Galle, PR, and Teufel, A (2012).
Genetic signatures shared in embryonic liver development and liver cancer define prognostically relevant subgroups in HCC
Molecular cancer, 11(1):55.

Krupp, M, Itzel, T, Maass, T, Hildebrandt, A, Galle, PR, and Teufel, A (2012).
CellLineNavigator: a workbench for cancer cell line analysis
Nucleic acids research.

Krupp, M, Marquardt, JU, Sahin, U, Galle, PR, Castle, J, and Teufel, A (2012).
RNA-Seq Atlas – A reference database for gene expression profiling in normal tissue by next generation sequencing
Bioinformatics.

Teufel, A, Becker, D, Weber, SN, Dooley, S, Breitkopf-Heinlein, K, Maass, T, Hochrath, K, Krupp, M, Marquardt, JU, Kolb, M, Korn, B, Niehrs, C, Zimmermann, T, Godoy, P, Galle, PR, and Lammert, F (2012).
Identification of RARRES1 as a core regulator in liver fibrosis
Journal of Molecular Medicine (Berlin, Germany).

Krupp, M, Maass, T, Marquardt, JU, Staib, F, Tobias, B, König, R, Biesterfeld, S, Galle, PR, Tresch, A, and Teufel, A (2011).
The functional cancer map: a systems-level synopsis of genetic deregulation in cancer.
BMC Med Genomics, 4:53.

Rey, JW, Schreiner, O, Barreiros, AP, Heise, M, Krupp, M, Schuchmann, M, Otto, G, Galle, PR, and Teufel, A (2011).
Acute renal failure and liver dysfunction after subcutaneous injection of 3-sn-phosphatidylcholine (Lipostabil®)-case report.
Z Gastroenterol, 49:340-343.

Buchkremer, S, Hendel, J, Krupp, M, Weinmann, A, Schlamp, K, Maass, T, Staib, F, Galle, PR, and Teufel, A (2010).
Library of molecular associations: curating the complex molecular basis of liver diseases.
BMC Genomics, 11(1):189.

Maass, T, Sfakianakis, I, Staib, F, Krupp, M, Galle, PR, and Teufel, A (2010).
Microarray-based gene expression analysis of hepatocellular carcinoma.
Curr Genomics, 11:261-268.

Wang, C, Maass, T, Krupp, M, Thieringer, F, Strand, S, Wörns, MA, Barreiros, AP, Galle, PR, and Teufel, A (2009).
A systems biology perspective on cholangiocellular carcinoma development: focus on MAPK-signaling and the extracellular environment.
J Hepatology, 50:1122-1131.

Schlamp, K, Weinmann, A, Krupp, M, Maass, T, Galle, PR, and Teufel, A (2008).
BlotBase: a northern blot database.
Gene, 427:47-50.


Selected Talks and Tutorials:

  • Invited Talk 'The functional cancer map' at the LBMCC lab, Kirchberg Hospital, Luxembourg